Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848802.1_cds_XP_016510541.1_23367
CDS Infomation

[gene=LOC107827843] [db_xref=GeneID:107827843] [protein=methionine--tRNA ligase, chloroplastic/mitochondrial-like] [protein_id=XP_016510541.1] [location=join(20894..21214,22513..22656,22840..22989,23626..23793,24388..24512,24796..24834,25038..25146,25248..25346,25912..26092,26200..26315,26512..26667,27136..27264,27356..27520)] [gbkey=CDS]
Sequence

ATGGCGTGCAGAGTTCAACACTCCATTCATAACAGTCTATATTTCTTATCTTCAACCCCT
TTGCGCAATTCTTTTAATATTAGAAAGTCTGATTTCAAGAATCGAATTAACTTTGGTAAA
ACTTTGCTTTCATCTCCTTCTTTTTCAAGAACTGCACTTTACTGCACTTGTAGCAGCAGT
AGCAGTAATGGTAAAGATAGTTTCTCTCCAAATGGGAGCGATGCATTTGTACTCACAACT
CCACTTTATTACGTTAATGCCCCTCCTCATATGGGCAGTGCGTATACCACCATTGCTGCT
GATGCCATTGCCCGTTTTCAGAGGCTACTTGAGAAGAAAGTTATATTCATCACTGGCACA
GATGAACATGGAGAAAAGATTGCTACTGCAGCTGCAGCTAATGGTTCCAGTCCAAGTGAA
CACTGTGACGTTGTATCACAAGCTTATAAAGCTCTCTGGAAAGATTTTGACATAAGTTAT
GACAAGTTTATCAGAACAACTGATCCAAAACATGAAGCTGTTGTGAAGGAATTTTACTCT
CGGGTTCTTGCCAATGGCGACATATACAGGGCTGATTATGAGGGACTTTATTGTGTCAAT
TGTGAGGAGTACAAGGACGAGAAGGATTTGCTGGCTAATAACTGTTGTCCTACGCACTTA
AAGCCATGTGTGAGAAGAAAAGAAGATAATTACTTCTTTGCTTTGTCAAAGTATCAACAA
CAGCTGGAAGAAATTTTAAGGCAAAACCCTGGATTCGTGCAGCCCTCTTATCGTCTAAAT
GAGGTCCAAGGTTGGATTAAAAGCGGCCTGAAAGATTTCTCTATTTCTCGAGCATCAGTA
GATTGGGGTATCGCGGTTCCTAATGATCCTGAGCAGACTATATATGTGTGGTTTGATGCT
TTATTGGGTTATGTATCTGCACTTTTGGAGGATAACGANCTTCCTTGTTGTTGTTCCTTG
GTTAACTATGAAGAGACTCAGATGTTTGACATTAATATTTTTTCTGTATTACGTTCAAAG
TTCTCATTTTGGATGCTTCTTTGGTTAGACCTAAAAGACATATTGCGATTTCATGCTGTT
TATTGGCCAGCTATGTTATTGTCAGCAGGAATTGGCCTCCCTAAGAGGGTATTTGGCCAT
GGATTCTTGACCAAGGATGGCATGAAGATGGGCAAGTCACTTGGAAATACGCTTGAGCCA
ACGGACTTGGTTCAGAGATTTGGACCTGATGCAGTGAGGTACTTTTTCCTCAGGGAAGTT
GAATTTGGTAATGATGGTGACTACTCAGAGGAACGGTTCATCAACATCATAAACGCACAT
TTAGCTAATACCATTGGTAATCTTCTAAACCGCACACTTGGACTTCTGAAAAAGAACTGC
CAATCAACTCTGGCGGTTGATTCATATGTTGCGGCAGAAGGAAACAAATTCAAGGTTGCG
GTGGAAAAACTGGTAGAGAAGGCACGTGTGCATTATGAAAATTTGGAGTTATCAGCAGCT
TGTGAGACTGTGCTGGAGATTGGTAATGCTGGAAATTCATACATTGATGAGCAGGCACCG
TGGTCTCTTTTCAAAAAAGGGGAGACAGCCTTTGAAACTGCAGCAAAGGATCTTGTAATT
ATACTGGAAGCAATGAGAATCATAGCAGTCGCGCTATCCCCGATTACACCAGGCTTAAGC
TTGAAGATATATTCACAACTTGGCTACACTGAGGACCAATTCAATGCTGTTAACTGGAGT
GATACCAAATGGGGCGGGCTGAAAGCTGGTCAGGTAATGGCACAGCCGACGCCAATTTTT
GCCAGAATAGAAGATGCAACTGAAGCAGAAACCAAAGGTGCAGCAACAAAGAAAGTTAAA
AAAGAGAAGGTGCCGAAAAGTAAGAGTCCTGTGGAAGCTTAG

Peptide Sequence

PEP ID

XP_016510541.1
PEP Infomation

PREDICTED: methionine--tRNA ligase, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MACRVQHSIHNSLYFLSSTPLRNSFNIRKSDFKNRINFGKTLLSSPSFSRTALYCTCSSS
SSNGKDSFSPNGSDAFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLEKKVIFITGT
DEHGEKIATAAAANGSSPSEHCDVVSQAYKALWKDFDISYDKFIRTTDPKHEAVVKEFYS
RVLANGDIYRADYEGLYCVNCEEYKDEKDLLANNCCPTHLKPCVRRKEDNYFFALSKYQQ
QLEEILRQNPGFVQPSYRLNEVQGWIKSGLKDFSISRASVDWGIAVPNDPEQTIYVWFDA
LLGYVSALLEDNXLPCCCSLVNYEETQMFDINIFSVLRSKFSFWMLLWLDLKDILRFHAV
YWPAMLLSAGIGLPKRVFGHGFLTKDGMKMGKSLGNTLEPTDLVQRFGPDAVRYFFLREV
EFGNDGDYSEERFINIINAHLANTIGNLLNRTLGLLKKNCQSTLAVDSYVAAEGNKFKVA
VEKLVEKARVHYENLELSAACETVLEIGNAGNSYIDEQAPWSLFKKGETAFETAAKDLVI
ILEAMRIIAVALSPITPGLSLKIYSQLGYTEDQFNAVNWSDTKWGGLKAGQVMAQPTPIF
ARIEDATEAETKGAATKKVKKEKVPKSKSPVEA

Transcript Sequence

Gene sequence data has not been registered.